R version 3.3.1 (2016-06-21) Platform: x86_64-pc-linux-gnu (64-bit) Running under: CentOS Linux 7 (Core) locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] grid parallel stats4 stats graphics grDevices utils [8] datasets methods base other attached packages: [1] DT_0.2 htmlwidgets_0.8 [3] pheatmap_1.0.8 wesanderson_0.3.2 [5] GO.db_3.4.0 AnnotationDbi_1.36.0 [7] kiRsten_0.0.0.9000 dplyr_0.5.0 [9] purrr_0.2.2 readr_1.0.0 [11] tidyr_0.6.0 tibble_1.2 [13] ggplot2_2.1.0 tidyverse_1.0.0 [15] gridExtra_2.2.1 knitr_1.15 [17] RColorBrewer_1.1-2 gplots_3.0.1 [19] DESeq2_1.14.0 SummarizedExperiment_1.2.3 [21] Biobase_2.32.0 GenomicRanges_1.24.3 [23] GenomeInfoDb_1.8.7 IRanges_2.6.1 [25] S4Vectors_0.10.3 BiocGenerics_0.18.0 loaded via a namespace (and not attached): [1] Rcpp_0.12.8 locfit_1.5-9.1 lattice_0.20-34 [4] gtools_3.5.0 assertthat_0.1 digest_0.6.10 [7] R6_2.2.0 plyr_1.8.4 chron_2.3-47 [10] acepack_1.4.1 RSQLite_1.0.0 evaluate_0.10 [13] zlibbioc_1.18.0 lazyeval_0.2.0 data.table_1.9.6 [16] annotate_1.50.1 gdata_2.17.0 rpart_4.1-10 [19] Matrix_1.2-7.1 rmarkdown_1.1 labeling_0.3 [22] splines_3.3.1 BiocParallel_1.6.6 geneplotter_1.50.0 [25] stringr_1.1.0 foreign_0.8-67 RCurl_1.96-0 [28] munsell_0.4.3 base64enc_0.1-3 htmltools_0.3.5 [31] nnet_7.3-12 htmlTable_1.7 codetools_0.2-15 [34] Hmisc_4.0-0 XML_3.98-1.4 bitops_1.0-6 [37] jsonlite_1.1 xtable_1.8-2 gtable_0.2.0 [40] DBI_0.5-1 magrittr_1.5 scales_0.4.1 [43] KernSmooth_2.23-15 stringi_1.1.2 reshape2_1.4.2 [46] XVector_0.12.1 genefilter_1.54.2 latticeExtra_0.6-28 [49] Formula_1.2-1 tools_3.3.1 survival_2.40-1 [52] yaml_2.1.14 colorspace_1.3-0 cluster_2.0.5 [55] caTools_1.17.1